MRIQC: individual T1w report

Summary

Subject ID: 028_ControlPre.
Date and time: 2018-05-06, 22:06.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.26179356427806794
cnr			4.3984120617162885
efc			0.55945088997977
fber			110.1865005493164
fwhm	avg		3.8885166666666664
fwhm	x		3.8446
fwhm	y		4.04574
fwhm	z		3.77521
icvs	csf		0.17597143580296556
icvs	gm		0.48980237032465834
icvs	wm		0.33422619387237607
inu	med		1.0219320058822632
inu	range		0.33682421445846566
qi	1		0.0
qi	2		0.0007985988773304267
rpve	csf		35.10015360339185
rpve	gm		14.833911509740343
rpve	wm		24.070777501898096
size	x		180
size	y		256
size	z		256
snr	csf		2.671035256243939
snr	gm		10.894112591383912
snr	total		9.40888123610961
snr	wm		14.661495860700974
snrd	csf		16.6553848412681
snrd	gm		29.901577753743478
snrd	total		31.925754856862273
snrd	wm		49.22030197557524
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	2.0518985647054215
summary	bg	mad	13.310447692871094
summary	bg	mean	47.64028549194336
summary	bg	median	46.22151184082031
summary	bg	n	2906474.0
summary	bg	p05	27.74668369293213
summary	bg	p95	72.3302215576172
summary	bg	stdv	14.19143295288086
summary	csf	k	6.892557101533386
summary	csf	mad	139.03207397460938
summary	csf	mean	330.42327880859375
summary	csf	median	338.3885192871094
summary	csf	n	7566.0
summary	csf	p05	138.08706665039062
summary	csf	p95	521.4380187988281
summary	csf	stdv	126.67977905273438
summary	gm	k	0.37451042753905606
summary	gm	mad	52.850826263427734
summary	gm	mean	606.3238525390625
summary	gm	median	607.5122680664062
summary	gm	n	37255.0
summary	gm	p05	512.61044921875
summary	gm	p95	696.2825744628906
summary	gm	stdv	55.764442443847656
summary	wm	k	0.6959242308095872
summary	wm	mad	49.90308380126953
summary	wm	mean	983.4766845703125
summary	wm	median	1000.0120239257812
summary	wm	n	137269.0
summary	wm	p05	837.0470703125
summary	wm	p95	1066.9248046875
summary	wm	stdv	68.20643615722656
tpm	overlap	csf	0.19861404597759247
tpm	overlap	gm	0.535171389579773
tpm	overlap	wm	0.5248131155967712
wm2max			0.6088894994952614

Metadata

AcquisitionMatrixPE	256
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber	0000000517353VH3
EchoTime	0.003828
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Michigan_State_University
InversionTime	0.04
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	Signa_HDxt
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	100
PixelBandwidth	162.734
ProtocolName	mprage_1mm_iso_20.83_bw
ReconMatrixPE	256
RepetitionTime	0.008596
SAR	0.306132
ScanOptions	NONE
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	mprage_1mm_iso_20.83_bw
SliceThickness	1
SoftwareVersions	24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices	1
StationName	MR03MR03

Provenance information

md5sum	0d9f36a872dab8ba34539f8f683d0393
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.