MRIQC: individual T1w report

Summary

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv0.26179356427806794
cnr4.3984120617162885
efc0.55945088997977
fber110.1865005493164
fwhmavg3.8885166666666664
fwhmx3.8446
fwhmy4.04574
fwhmz3.77521
icvscsf0.17597143580296556
icvsgm0.48980237032465834
icvswm0.33422619387237607
inumed1.0219320058822632
inurange0.33682421445846566
qi10.0
qi20.0007985988773304267
rpvecsf35.10015360339185
rpvegm14.833911509740343
rpvewm24.070777501898096
sizex180
sizey256
sizez256
snrcsf2.671035256243939
snrgm10.894112591383912
snrtotal9.40888123610961
snrwm14.661495860700974
snrdcsf16.6553848412681
snrdgm29.901577753743478
snrdtotal31.925754856862273
snrdwm49.22030197557524
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk2.0518985647054215
summarybgmad13.310447692871094
summarybgmean47.64028549194336
summarybgmedian46.22151184082031
summarybgn2906474.0
summarybgp0527.74668369293213
summarybgp9572.3302215576172
summarybgstdv14.19143295288086
summarycsfk6.892557101533386
summarycsfmad139.03207397460938
summarycsfmean330.42327880859375
summarycsfmedian338.3885192871094
summarycsfn7566.0
summarycsfp05138.08706665039062
summarycsfp95521.4380187988281
summarycsfstdv126.67977905273438
summarygmk0.37451042753905606
summarygmmad52.850826263427734
summarygmmean606.3238525390625
summarygmmedian607.5122680664062
summarygmn37255.0
summarygmp05512.61044921875
summarygmp95696.2825744628906
summarygmstdv55.764442443847656
summarywmk0.6959242308095872
summarywmmad49.90308380126953
summarywmmean983.4766845703125
summarywmmedian1000.0120239257812
summarywmn137269.0
summarywmp05837.0470703125
summarywmp951066.9248046875
summarywmstdv68.20643615722656
tpmoverlapcsf0.19861404597759247
tpmoverlapgm0.535171389579773
tpmoverlapwm0.5248131155967712
wm2max0.6088894994952614

Metadata

AcquisitionMatrixPE256
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber0000000517353VH3
EchoTime0.003828
FlipAngle8
ImageOrientationPatientDICOM[0, 1, 0, 0, 0, -1]
ImageType['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOMROW
InstitutionNameMichigan_State_University
InversionTime0.04
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerGE
ManufacturersModelNameSigna_HDxt
ModalityMR
PatientPositionHFS
PercentPhaseFOV100
PixelBandwidth162.734
ProtocolNamemprage_1mm_iso_20.83_bw
ReconMatrixPE256
RepetitionTime0.008596
SAR0.306132
ScanOptionsNONE
ScanningSequenceRM
SequenceVariantNONE
SeriesDescriptionmprage_1mm_iso_20.83_bw
SliceThickness1
SoftwareVersions24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices1
StationNameMR03MR03

Provenance information

md5sum0d9f36a872dab8ba34539f8f683d0393
softwaremriqc
version0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.